Combining High-Resolution Contact Data with Virological Data to Investigate Influenza Transmission in a Tertiary Care Hospital
Identifieur interne : 000488 ( Main/Exploration ); précédent : 000487; suivant : 000489Combining High-Resolution Contact Data with Virological Data to Investigate Influenza Transmission in a Tertiary Care Hospital
Auteurs : Nicolas Voirin ; Ce Cile Payet ; Alain Barrat [France] ; Ciro Cattuto ; Nagham Khanafer ; Corinne Re Gis ; Byeul-A Kim ; Brigitte Comte ; Jean-Se Bastien Casalegno ; Bruno Lina ; Philippe VanhemsSource :
- Infection Control and Hospital Epidemiology [ 0899-823X ] ; 2015-03-01.
Abstract
objective. Contact patterns and microbiological data contribute to a detailed understanding of infectious disease transmission. We explored the automated collection of high-resolution contact data by wearable sensors combined with virological data to investigate influenza transmission among patients and healthcare workers in a geriatric unit.design. Proof-of-concept observational study. Detailed information on contact patterns were collected by wearable sensors over 12 days. Systematic nasopharyngeal swabs were taken, analyzed for influenza A and B viruses by real-time polymerase chain reaction, and cultured for phylogenetic analysis.setting. An acute-care geriatric unit in a tertiary care hospital.participants. Patients, nurses, and medical doctors.results. A total of 18,765 contacts were recorded among 37 patients, 32 nurses, and 15 medical doctors. Most contacts occurred between nurses or between a nurse and a patient. Fifteen individuals had influenza A (H3N2). Among these, 11 study participants were positive at the beginning of the study or at admission, and 3 patients and 1 nurse acquired laboratory-confirmed influenza during the study. Infectious medical doctors and nurses were identified as potential sources of hospital-acquired influenza (HA-Flu) for patients, and infectious patients were identified as likely sources for nurses. Only 1 potential transmission between nurses was observed.conclusions. Combining high-resolution contact data and virological data allowed us to identify a potential transmission route in each possible case of HA-Flu. This promising method should be applied for longer periods in larger populations, with more complete use of phylogenetic analyses, for a better understanding of influenza transmission dynamics in a hospital setting.
Url:
DOI: 10.1017/ice.2014.53
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Hal, to step Corpus: 000040
- to stream Hal, to step Curation: 000040
- to stream Hal, to step Checkpoint: 000115
- to stream Main, to step Merge: 000489
- to stream Main, to step Curation: 000488
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Combining High-Resolution Contact Data with Virological Data to Investigate Influenza Transmission in a Tertiary Care Hospital</title>
<author><name sortKey="Voirin, Nicolas" sort="Voirin, Nicolas" uniqKey="Voirin N" first="Nicolas" last="Voirin">Nicolas Voirin</name>
</author>
<author><name sortKey="Payet, Ce Cile" sort="Payet, Ce Cile" uniqKey="Payet C" first="Ce Cile" last="Payet">Ce Cile Payet</name>
</author>
<author><name sortKey="Barrat, Alain" sort="Barrat, Alain" uniqKey="Barrat A" first="Alain" last="Barrat">Alain Barrat</name>
<affiliation wicri:level="1"><hal:affiliation type="researchteam" xml:id="struct-407864" status="VALID"> <orgName>CPT - E5 Physique statistique et systèmes complexes</orgName>
<desc> <address> <country key="FR"></country>
</address>
</desc>
<listRelation> <relation active="#struct-179898" type="direct"></relation>
<relation name="UMR7332" active="#struct-198056" type="indirect"></relation>
<relation name="UMR7332" active="#struct-303091" type="indirect"></relation>
<relation name="UMR7332" active="#struct-441569" type="indirect"></relation>
</listRelation>
<tutelles><tutelle active="#struct-179898" type="direct"><org type="laboratory" xml:id="struct-179898" status="VALID"> <idno type="RNSR">201220252R</idno>
<idno type="IdRef">074454935</idno>
<orgName>Centre de Physique Théorique - UMR 7332</orgName>
<orgName type="acronym">CPT</orgName>
<date type="start">2012</date>
<desc> <address> <addrLine>Centre de Physique ThéoriqueCampus de Luminy, Case 907163 Avenue de Luminy13288 Marseille cedex 9, France</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.cpt.univ-mrs.fr</ref>
</desc>
<listRelation> <relation name="UMR7332" active="#struct-198056" type="direct"></relation>
<relation name="UMR7332" active="#struct-303091" type="direct"></relation>
<relation name="UMR7332" active="#struct-441569" type="direct"></relation>
</listRelation>
</org>
</tutelle>
<tutelle name="UMR7332" active="#struct-198056" type="indirect"><org type="institution" xml:id="struct-198056" status="VALID"> <idno type="IdRef">15863621X</idno>
<idno type="ISNI">0000 0001 2176 4817</idno>
<orgName>Aix Marseille Université</orgName>
<orgName type="acronym">AMU</orgName>
<date type="start">2012-01-01</date>
<desc> <address> <addrLine>Aix-Marseille UniversitéJardins du Pharo58 Boulevard Charles Livon13284 Marseille cedex 7</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.univ-amu.fr/</ref>
</desc>
</org>
</tutelle>
<tutelle name="UMR7332" active="#struct-303091" type="indirect"><org type="institution" xml:id="struct-303091" status="VALID"> <idno type="IdRef">031122337</idno>
<orgName>Université de Toulon</orgName>
<orgName type="acronym">UTLN</orgName>
<desc> <address> <addrLine>Avenue de l'Université - BP 20132 - 83957 La Garde Cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.univ-tln.fr/</ref>
</desc>
</org>
</tutelle>
<tutelle name="UMR7332" active="#struct-441569" type="indirect"><org type="institution" xml:id="struct-441569" status="VALID"> <idno type="IdRef">02636817X</idno>
<idno type="ISNI">0000000122597504</idno>
<orgName>Centre National de la Recherche Scientifique</orgName>
<orgName type="acronym">CNRS</orgName>
<date type="start">1939-10-19</date>
<desc> <address> <country key="FR"></country>
</address>
<ref type="url">http://www.cnrs.fr/</ref>
</desc>
</org>
</tutelle>
</tutelles>
</hal:affiliation>
<country>France</country>
<placeName><settlement type="city">Marseille</settlement>
<region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region>
</placeName>
<orgName type="university">Université d'Aix-Marseille</orgName>
</affiliation>
</author>
<author><name sortKey="Cattuto, Ciro" sort="Cattuto, Ciro" uniqKey="Cattuto C" first="Ciro" last="Cattuto">Ciro Cattuto</name>
</author>
<author><name sortKey="Khanafer, Nagham" sort="Khanafer, Nagham" uniqKey="Khanafer N" first="Nagham" last="Khanafer">Nagham Khanafer</name>
</author>
<author><name sortKey="Re Gis, Corinne" sort="Re Gis, Corinne" uniqKey="Re Gis C" first="Corinne" last="Re Gis">Corinne Re Gis</name>
</author>
<author><name sortKey="Kim, Byeul A" sort="Kim, Byeul A" uniqKey="Kim B" first="Byeul-A" last="Kim">Byeul-A Kim</name>
</author>
<author><name sortKey="Comte, Brigitte" sort="Comte, Brigitte" uniqKey="Comte B" first="Brigitte" last="Comte">Brigitte Comte</name>
</author>
<author><name sortKey="Casalegno, Jean Se Bastien" sort="Casalegno, Jean Se Bastien" uniqKey="Casalegno J" first="Jean-Se Bastien" last="Casalegno">Jean-Se Bastien Casalegno</name>
</author>
<author><name sortKey="Lina, Bruno" sort="Lina, Bruno" uniqKey="Lina B" first="Bruno" last="Lina">Bruno Lina</name>
</author>
<author><name sortKey="Vanhems, Philippe" sort="Vanhems, Philippe" uniqKey="Vanhems P" first="Philippe" last="Vanhems">Philippe Vanhems</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">HAL</idno>
<idno type="RBID">Hal:hal-01123961</idno>
<idno type="halId">hal-01123961</idno>
<idno type="halUri">https://hal.archives-ouvertes.fr/hal-01123961</idno>
<idno type="url">https://hal.archives-ouvertes.fr/hal-01123961</idno>
<idno type="doi">10.1017/ice.2014.53</idno>
<date when="2015-03-01">2015-03-01</date>
<idno type="wicri:Area/Hal/Corpus">000040</idno>
<idno type="wicri:Area/Hal/Curation">000040</idno>
<idno type="wicri:Area/Hal/Checkpoint">000115</idno>
<idno type="wicri:explorRef" wicri:stream="Hal" wicri:step="Checkpoint">000115</idno>
<idno type="wicri:doubleKey">0899-823X:2015:Voirin N:combining:high:resolution</idno>
<idno type="wicri:Area/Main/Merge">000489</idno>
<idno type="wicri:Area/Main/Curation">000488</idno>
<idno type="wicri:Area/Main/Exploration">000488</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Combining High-Resolution Contact Data with Virological Data to Investigate Influenza Transmission in a Tertiary Care Hospital</title>
<author><name sortKey="Voirin, Nicolas" sort="Voirin, Nicolas" uniqKey="Voirin N" first="Nicolas" last="Voirin">Nicolas Voirin</name>
</author>
<author><name sortKey="Payet, Ce Cile" sort="Payet, Ce Cile" uniqKey="Payet C" first="Ce Cile" last="Payet">Ce Cile Payet</name>
</author>
<author><name sortKey="Barrat, Alain" sort="Barrat, Alain" uniqKey="Barrat A" first="Alain" last="Barrat">Alain Barrat</name>
<affiliation wicri:level="1"><hal:affiliation type="researchteam" xml:id="struct-407864" status="VALID"> <orgName>CPT - E5 Physique statistique et systèmes complexes</orgName>
<desc> <address> <country key="FR"></country>
</address>
</desc>
<listRelation> <relation active="#struct-179898" type="direct"></relation>
<relation name="UMR7332" active="#struct-198056" type="indirect"></relation>
<relation name="UMR7332" active="#struct-303091" type="indirect"></relation>
<relation name="UMR7332" active="#struct-441569" type="indirect"></relation>
</listRelation>
<tutelles><tutelle active="#struct-179898" type="direct"><org type="laboratory" xml:id="struct-179898" status="VALID"> <idno type="RNSR">201220252R</idno>
<idno type="IdRef">074454935</idno>
<orgName>Centre de Physique Théorique - UMR 7332</orgName>
<orgName type="acronym">CPT</orgName>
<date type="start">2012</date>
<desc> <address> <addrLine>Centre de Physique ThéoriqueCampus de Luminy, Case 907163 Avenue de Luminy13288 Marseille cedex 9, France</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.cpt.univ-mrs.fr</ref>
</desc>
<listRelation> <relation name="UMR7332" active="#struct-198056" type="direct"></relation>
<relation name="UMR7332" active="#struct-303091" type="direct"></relation>
<relation name="UMR7332" active="#struct-441569" type="direct"></relation>
</listRelation>
</org>
</tutelle>
<tutelle name="UMR7332" active="#struct-198056" type="indirect"><org type="institution" xml:id="struct-198056" status="VALID"> <idno type="IdRef">15863621X</idno>
<idno type="ISNI">0000 0001 2176 4817</idno>
<orgName>Aix Marseille Université</orgName>
<orgName type="acronym">AMU</orgName>
<date type="start">2012-01-01</date>
<desc> <address> <addrLine>Aix-Marseille UniversitéJardins du Pharo58 Boulevard Charles Livon13284 Marseille cedex 7</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.univ-amu.fr/</ref>
</desc>
</org>
</tutelle>
<tutelle name="UMR7332" active="#struct-303091" type="indirect"><org type="institution" xml:id="struct-303091" status="VALID"> <idno type="IdRef">031122337</idno>
<orgName>Université de Toulon</orgName>
<orgName type="acronym">UTLN</orgName>
<desc> <address> <addrLine>Avenue de l'Université - BP 20132 - 83957 La Garde Cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.univ-tln.fr/</ref>
</desc>
</org>
</tutelle>
<tutelle name="UMR7332" active="#struct-441569" type="indirect"><org type="institution" xml:id="struct-441569" status="VALID"> <idno type="IdRef">02636817X</idno>
<idno type="ISNI">0000000122597504</idno>
<orgName>Centre National de la Recherche Scientifique</orgName>
<orgName type="acronym">CNRS</orgName>
<date type="start">1939-10-19</date>
<desc> <address> <country key="FR"></country>
</address>
<ref type="url">http://www.cnrs.fr/</ref>
</desc>
</org>
</tutelle>
</tutelles>
</hal:affiliation>
<country>France</country>
<placeName><settlement type="city">Marseille</settlement>
<region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region>
</placeName>
<orgName type="university">Université d'Aix-Marseille</orgName>
</affiliation>
</author>
<author><name sortKey="Cattuto, Ciro" sort="Cattuto, Ciro" uniqKey="Cattuto C" first="Ciro" last="Cattuto">Ciro Cattuto</name>
</author>
<author><name sortKey="Khanafer, Nagham" sort="Khanafer, Nagham" uniqKey="Khanafer N" first="Nagham" last="Khanafer">Nagham Khanafer</name>
</author>
<author><name sortKey="Re Gis, Corinne" sort="Re Gis, Corinne" uniqKey="Re Gis C" first="Corinne" last="Re Gis">Corinne Re Gis</name>
</author>
<author><name sortKey="Kim, Byeul A" sort="Kim, Byeul A" uniqKey="Kim B" first="Byeul-A" last="Kim">Byeul-A Kim</name>
</author>
<author><name sortKey="Comte, Brigitte" sort="Comte, Brigitte" uniqKey="Comte B" first="Brigitte" last="Comte">Brigitte Comte</name>
</author>
<author><name sortKey="Casalegno, Jean Se Bastien" sort="Casalegno, Jean Se Bastien" uniqKey="Casalegno J" first="Jean-Se Bastien" last="Casalegno">Jean-Se Bastien Casalegno</name>
</author>
<author><name sortKey="Lina, Bruno" sort="Lina, Bruno" uniqKey="Lina B" first="Bruno" last="Lina">Bruno Lina</name>
</author>
<author><name sortKey="Vanhems, Philippe" sort="Vanhems, Philippe" uniqKey="Vanhems P" first="Philippe" last="Vanhems">Philippe Vanhems</name>
</author>
</analytic>
<idno type="DOI">10.1017/ice.2014.53</idno>
<series><title level="j">Infection Control and Hospital Epidemiology</title>
<idno type="ISSN">0899-823X</idno>
<imprint><date type="datePub">2015-03-01</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"> <p>objective. Contact patterns and microbiological data contribute to a detailed understanding of infectious disease transmission. We explored the automated collection of high-resolution contact data by wearable sensors combined with virological data to investigate influenza transmission among patients and healthcare workers in a geriatric unit.design. Proof-of-concept observational study. Detailed information on contact patterns were collected by wearable sensors over 12 days. Systematic nasopharyngeal swabs were taken, analyzed for influenza A and B viruses by real-time polymerase chain reaction, and cultured for phylogenetic analysis.setting. An acute-care geriatric unit in a tertiary care hospital.participants. Patients, nurses, and medical doctors.results. A total of 18,765 contacts were recorded among 37 patients, 32 nurses, and 15 medical doctors. Most contacts occurred between nurses or between a nurse and a patient. Fifteen individuals had influenza A (H3N2). Among these, 11 study participants were positive at the beginning of the study or at admission, and 3 patients and 1 nurse acquired laboratory-confirmed influenza during the study. Infectious medical doctors and nurses were identified as potential sources of hospital-acquired influenza (HA-Flu) for patients, and infectious patients were identified as likely sources for nurses. Only 1 potential transmission between nurses was observed.conclusions. Combining high-resolution contact data and virological data allowed us to identify a potential transmission route in each possible case of HA-Flu. This promising method should be applied for longer periods in larger populations, with more complete use of phylogenetic analyses, for a better understanding of influenza transmission dynamics in a hospital setting.</p>
</div>
</front>
</TEI>
<affiliations><list><country><li>France</li>
</country>
<region><li>Provence-Alpes-Côte d'Azur</li>
</region>
<settlement><li>Marseille</li>
</settlement>
<orgName><li>Université d'Aix-Marseille</li>
</orgName>
</list>
<tree><noCountry><name sortKey="Casalegno, Jean Se Bastien" sort="Casalegno, Jean Se Bastien" uniqKey="Casalegno J" first="Jean-Se Bastien" last="Casalegno">Jean-Se Bastien Casalegno</name>
<name sortKey="Cattuto, Ciro" sort="Cattuto, Ciro" uniqKey="Cattuto C" first="Ciro" last="Cattuto">Ciro Cattuto</name>
<name sortKey="Comte, Brigitte" sort="Comte, Brigitte" uniqKey="Comte B" first="Brigitte" last="Comte">Brigitte Comte</name>
<name sortKey="Khanafer, Nagham" sort="Khanafer, Nagham" uniqKey="Khanafer N" first="Nagham" last="Khanafer">Nagham Khanafer</name>
<name sortKey="Kim, Byeul A" sort="Kim, Byeul A" uniqKey="Kim B" first="Byeul-A" last="Kim">Byeul-A Kim</name>
<name sortKey="Lina, Bruno" sort="Lina, Bruno" uniqKey="Lina B" first="Bruno" last="Lina">Bruno Lina</name>
<name sortKey="Payet, Ce Cile" sort="Payet, Ce Cile" uniqKey="Payet C" first="Ce Cile" last="Payet">Ce Cile Payet</name>
<name sortKey="Re Gis, Corinne" sort="Re Gis, Corinne" uniqKey="Re Gis C" first="Corinne" last="Re Gis">Corinne Re Gis</name>
<name sortKey="Vanhems, Philippe" sort="Vanhems, Philippe" uniqKey="Vanhems P" first="Philippe" last="Vanhems">Philippe Vanhems</name>
<name sortKey="Voirin, Nicolas" sort="Voirin, Nicolas" uniqKey="Voirin N" first="Nicolas" last="Voirin">Nicolas Voirin</name>
</noCountry>
<country name="France"><region name="Provence-Alpes-Côte d'Azur"><name sortKey="Barrat, Alain" sort="Barrat, Alain" uniqKey="Barrat A" first="Alain" last="Barrat">Alain Barrat</name>
</region>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/H2N2V1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000488 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000488 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Sante |area= H2N2V1 |flux= Main |étape= Exploration |type= RBID |clé= Hal:hal-01123961 |texte= Combining High-Resolution Contact Data with Virological Data to Investigate Influenza Transmission in a Tertiary Care Hospital }}
This area was generated with Dilib version V0.6.33. |